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A comparative account of protein-protein interaction resources, feature-validations and application-based categorizations

AtPID - Arabidopsis thaliana Protein Interactome Database

Tool nameAtPID - Arabidopsis thaliana Protein Interactome Database
URLhttp://www.megabionet.org/atpid
Important featuresA database of interactions in plant proteins (Arabidopsis thaliana). Provides predicted interactions based on gene expression, genomic data, Gene Ontology terms, orthology. Provides domain interactions. Provides functional associations for the interactions.
CitationsCui J, Li P, Li G, Xu F, Zhao C, Li Y, Yang Z, Wang G, Yu Q, Li Y, Shi T. AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology. Nucleic Acids Res. 2008 Jan;36(Database issue):D999-1008. Epub 2007 Oct 25. PubMed PMID: 17962307; PubMed Central PMCID: PMC2238993.
Year of publication2007
Rank by usage frequency100
CommentsURL could not be retrieved (20/12/2011).
FunctionPredicted PPIs based on gene expression, Predicted PPIs based on genomic data, Predicted PPIs based on gene ontology (GO), Infer domain interaction from PPI data, Predict PPI network in a species by using ortholog information, PPIs with their functional associations, PPIs along with supporting evidences, PPIs of plants proteins, Protein-domain/ domain-domain interactions
Categoryhttp://www.megabionet.org/atpid, A database of interactions in plant proteins (Arabidopsis thaliana). Provides predicted interactions based on gene expression, genomic data, Gene Ontology terms, orthology. Provides domain interactions. Provides functional associations for the interactions., Cui J, Li P, Li G, Xu F, Zhao C, Li Y, Yang Z, Wang G, Yu Q, Li Y, Shi T. AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology. Nucleic Acids Res. 2008 Jan;36(Database issue):D999-1008. Epub 2007 Oct 25. PubMed PMID: 17962307; PubMed Central PMCID: PMC2238993., 2007, 100, URL could not be retrieved (20/12/2011).
Online/downloadable
OnlineOnline
Downloadable
Registration required
FreeFree
Paid
Working statusURL could not be retrieved
FunctionPredicted PPIs based on gene ontology (GO)
Category
Tool_frequency

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