AtPID - Arabidopsis thaliana Protein Interactome Database Tool name | AtPID - Arabidopsis thaliana Protein Interactome Database |
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URL | http://www.megabionet.org/atpid |
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Important features | A database of interactions in plant proteins (Arabidopsis thaliana). Provides predicted interactions based on gene expression, genomic data, Gene Ontology terms, orthology. Provides domain interactions. Provides functional associations for the interactions. |
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Citations | Cui J, Li P, Li G, Xu F, Zhao C, Li Y, Yang Z, Wang G, Yu Q, Li Y, Shi T. AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology. Nucleic Acids Res. 2008 Jan;36(Database issue):D999-1008. Epub 2007 Oct 25. PubMed PMID: 17962307; PubMed Central PMCID: PMC2238993. |
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Year of publication | 2007 |
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Rank by usage frequency | 100 |
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Comments | URL could not be retrieved (20/12/2011). |
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Function | Predicted PPIs based on gene expression, Predicted PPIs based on genomic data, Predicted PPIs based on gene ontology (GO), Infer domain interaction from PPI data, Predict PPI network in a species by using ortholog information, PPIs with their functional associations, PPIs along with supporting evidences, PPIs of plants proteins, Protein-domain/ domain-domain interactions |
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Category | http://www.megabionet.org/atpid, A database of interactions in plant proteins (Arabidopsis thaliana). Provides predicted interactions based on gene expression, genomic data, Gene Ontology terms, orthology. Provides domain interactions. Provides functional associations for the interactions., Cui J, Li P, Li G, Xu F, Zhao C, Li Y, Yang Z, Wang G, Yu Q, Li Y, Shi T. AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology. Nucleic Acids Res. 2008 Jan;36(Database issue):D999-1008. Epub 2007 Oct 25. PubMed PMID: 17962307; PubMed Central PMCID: PMC2238993., 2007, 100, URL could not be retrieved (20/12/2011). |
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Online/downloadable | |
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Online | Online |
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Downloadable | |
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Registration required | |
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Free | Free |
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Paid | |
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Working status | URL could not be retrieved |
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Function | Predicted PPIs based on gene ontology (GO) |
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Category | |
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Tool_frequency | |
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